![]() ![]() data/vmd_completion.dat "/usr/local/lib/vmd" LINUXAMD64/OptiXShaders.ptx "/usr/local/lib/vmd/shaders" \Ĭp. (cd "/usr/local/lib/vmd"/scripts tar -xf -)Ĭp. lib/tachyon/tachyon_LINUXAMD64 "/usr/local/lib/vmd" LINUXAMD64/vmd_LINUXAMD64 "/usr/local/lib/vmd"Ĭd. Mv -f "/usr/local/lib/vmd/vmd_LINUXAMD64" "/usr/local/lib/vmd/OLD_vmd_LINUXAMD64" rm -f "/usr/local/lib/vmd/OLD_vmd_LINUXAMD64" fiĬp. Mkdir: cannot create directory ‘/usr/local/lib/vmd’: Permission denied rwxrw-r- 1 aaron aaron 118764 May 7 16:06 file configureĬonfigure: Perl script, ASCII text executable, with very long cd file configureĬonfigure: ERROR: cannot open `configure' (No such file or cd chmod u+x. The only material that was posted was useless information about basic commands that obviously do not work for anyone.Īgain, I really appreciate you guys' help on this issue and I am grateful for your continued support.ĭrwxr-xr-x 15 aaron aaron 4096 May 7 16:12. The main road block is that when I searched this issue online, anyone who previously had the issue did not post a solution. It also seems that if I am having this problem and my OS is a clean install of Ubuntu, there should be an easy solution since I am sure other have had this same issue. The problem stems from the fact that the su command does not work not matter what I do. The reason that I need to use this command is because I am following this installation guide for VMD found at this site: The operating system that I am running is a clean install of Ubuntu 14.04 LTS. ![]() Lastly, I am extremely new to the Linux operating system and this is why I am having so many issues. I have also attached a picture of the original issue I am having. Then I tried the bash configure option in the same different ways and got even less of a result. it did absolutely nothing as far as I can tell. ![]() I tried chmod u+x configure in a few different ways, none of which did anything at all. Since that did not amount to anything at all, I moved on to the next option. Anywho, here is the result of everything that you guys have suggested.įirst ls configure.png result of ls command in vmd folder.png CHMOD.png bash.png original issue.png I apologize for not responding sooner, but I have been very busy this past week. configure is actually a script and requires execute permissions to run If anyone could provide a link to information about how to solve this issue, or if someone would be kind enough in explain to me how to overcome this issue, I would be very grateful. For further specificity, the program I am attempting to install is VMD (Visual Molecular Dynamics). The problem is not with the file I am trying to install because the file has nothing to do with permissions in the Linux operating system. Using sudo su username also produces no result. I understand that su doesn't work because Ubuntu does not have a default root file installed, but even using su username still does not work (it will create a root directory, but still gives me the permission denied error). My main problem is that I cannot get "./configure" to work at all. Info) Full GLSL rendering mode is available.I have been researching online and many different people have had this issue, and I have not seen an actual solution to the problem, so I am attempting to get this problem resolved by posting a new thread. Info) Features: STENCIL MDE CVA MTX NPOT PP PS GLSL(OVF) Info) OpenGL renderer: Mesa DRI Intel(R) 965G 20061102 Info) Multithreading available, 2 CPUs detected. Info) Email questions and bug reports to Please include this reference in published work using VMD: Info) VMD for LINUXAMD64, version 1.8.6 (April 6, 2007) I read through the Linux release notes documentation but found nothing there which could help me.ĭid you join the vmd mailing list? I haven't yet, but I would like to post the same question there. (Although I expect the results to be exactly the same). I am going to try and compile the program from the source code and see what happens. I have the problem on both 8.04.1 and 8.10 (64-bit). I thought maybe that it has something to do with the fact that we are using Intel's G35 integrated graphics chip. Clients of mine who work in our Chemistry department are suffering the same issue.
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